Examples & Demos

This section contains interactive Jupyter notebook examples demonstrating FADVI’s capabilities on real datasets. Comprehensive benchmarking of FADVI against other integration methods on single-cell immune atlas data is included.

• Benchmarking FADVI with other methods on Single-Cell Immune Atlas

Note

To run these notebooks locally, you’ll need to install additional dependencies:

pip install scib scib-metrics matplotlib

The dataset used in the benchmark needs to be downloaded separately at Openproblems.